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Optimization and adaptation of the diagnostic capacity for the performance of large volumes of SARS-CoV-2 RT-PCR

Authors

Camacho-Martínez, Pedro , MARTÍN GUTIÉRREZ, GUILLERMO, Peñalva, Germán , Merino-Díaz, Laura , Lepe, José Antonio

External publication

No

Means

Enferm Infecc Microbiol Clin

Scope

Article

Nature

Científica

JCR Quartile

SJR Quartile

JCR Impact

1.994

SJR Impact

0.277

Publication date

01/01/2021

Abstract

INTRODUCTION: In the present manuscript we describe the planning carried out in our hospital to adapt our diagnostic capability to perform large numbers of SARS-CoV-2 RT-PCR. METHODS: The analysis and prediction of workflow included the number of RT-PCR per week from the beginning of the pandemic, with a total of 31971 determinations. The planning phase was developed based on the different scenarios previously predicted. RESULTS: According to the predictions obtained, an automated custom solution was chosen, based on the use of the OT-2 open-source liquid-handling robots (Opentrons), to design a reproducible workflow that achieved a production capacity of 5640 samples/day, with a time of response of four hours per procedure. CONCLUSIONS: The analysis and prediction of workflow, along with the use of the robotic platforms OT-2, provided a robust structure to deal with the high demand of determinations that this pandemic requires.

Keywords

Capacidad diagnóstica; Diagnostic capacity; Opentrons; PCR-RT; RT-PCR; SARS-CoV-2

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